Dr Guy Jacobs

Wlasnowolski, M., Kozlov, N., Wojcik, M., Jacobs, GS. and Plewczynski, D., 2026. enhancer3D: 3D chromatin structures and enhancer-promoter distance profiles for archaic and modern human genomes Nucleic Acids Research, v. 54
Doi: http://doi.org/10.1093/nar/gkaf1256

Jacobs, G., Febinia, CA., Luqman, H. and Lewis, J., 2025 (Accepted for publication). From sporulation to village differentiation: the shaping of the social microbiome over rural-to-urban lifestyle transition in Indonesia Cell reports,

Wlasnowolski, M., Kozlov, N., Wojcik, M., Jacobs, G. and Plewczynski, D., 2025 (Accepted for publication). enhancer3D: 3D Chromatin Structures and Enhancer–Promoter Distance Profiles for Archaic and Modern Human Genomes Nucleic Acids Research (NAR),

Kusuma, P., Cox, M., Barker, G., Sudoyo, H., Lansing, JS. and Jacobs, G., 2023 (Accepted for publication). Deep ancestry of Bornean hunter-gatherers supports long-term local ancestry dynamics Cell Reports,

Lansing, JS., Kremer, JN., Suryawan, IBG., Sathiakumar, S., Jacobs, GS., Chung, NN. and Artha Wiguna, IWA., 2023. Adaptive irrigation management by Balinese farmers reduces greenhouse gas emissions and increases rice yields. Philos Trans R Soc Lond B Biol Sci, v. 378
Doi: http://doi.org/10.1098/rstb.2022.0400

Lansing, JS., Jacobs, GS., Downey, SS., Norquest, PK., Cox, MP., Kuhn, SL., Miller, JH., Malik, SG., Sudoyo, H. and Kusuma, P., 2022 (Accepted for publication). Deep ancestry of collapsing networks of nomadic hunter-gatherers in Borneo Evolutionary Human Sciences, v. 4
Doi: http://doi.org/10.1017/ehs.2022.3

Natri, HM., Hudjashov, G., Jacobs, G., Kusuma, P., Saag, L., Darusallam, CC., Metspalu, M., Sudoyo, H., Cox, MP., Gallego Romero, I. and Banovich, NE., 2022. Genetic architecture of gene regulation in Indonesian populations identifies QTLs associated with global and local ancestries. Am J Hum Genet, v. 109
Doi: http://doi.org/10.1016/j.ajhg.2021.11.017

Vespasiani, DM., Jacobs, GS., Cook, LE., Brucato, N., Leavesley, M., Kinipi, C., Ricaut, F-X., Cox, MP. and Gallego Romero, I., 2022. Denisovan introgression has shaped the immune system of present-day Papuans. PLoS Genet, v. 18
Doi: http://doi.org/10.1371/journal.pgen.1010470

Teixeira, JC., Jacobs, GS., Stringer, C., Tuke, J., Hudjashov, G., Purnomo, GA., Sudoyo, H., Cox, MP., Tobler, R., Turney, CSM., Cooper, A. and Helgen, KM., 2021. Widespread Denisovan ancestry in Island Southeast Asia but no evidence of substantial super-archaic hominin admixture. Nat Ecol Evol, v. 5
Doi: http://doi.org/10.1038/s41559-021-01408-0

Lansing, JS., Chung, NN., Chew, LY. and Jacobs, GS., 2021. Averting evolutionary suicide from the tragedy of the commons International Journal of the Commons, v. 15
Doi: http://doi.org/10.5334/IJC.1118

Natri, HM., Bobowik, KS., Kusuma, P., Crenna Darusallam, C., Jacobs, GS., Hudjashov, G., Lansing, JS., Sudoyo, H., Banovich, NE., Cox, MP. and Gallego Romero, I., 2020. Genome-wide DNA methylation and gene expression patterns reflect genetic ancestry and environmental differences across the Indonesian archipelago. PLoS Genet, v. 16
Doi: http://doi.org/10.1371/journal.pgen.1008749

Rai, N., Verma, SK., Gaur, A., Iliescu, FM., Thakur, M., Golla, TR., Chandra, K., Prakash, S., Tabasum, W., Ara, S., Singh, L., Thangaraj, K. and Jacobs, GS., 2020. Ancient mtDNA from the extinct Indian cheetah supports unexpectedly deep divergence from African cheetahs. Sci Rep, v. 10
Doi: http://doi.org/10.1038/s41598-020-60751-7

Riddell, J., Basu Mallick, C., Jacobs, GS., Schoenebeck, JJ. and Headon, DJ., 2020. Characterisation of a second gain of function EDAR variant, encoding EDAR380R, in East Asia. Eur J Hum Genet, v. 28
Doi: http://doi.org/10.1038/s41431-020-0660-6

Jacobs, GS., Hudjashov, G., Saag, L., Kusuma, P., Darusallam, CC., Lawson, DJ., Mondal, M., Pagani, L., Ricaut, F-X., Stoneking, M., Metspalu, M., Sudoyo, H., Lansing, JS. and Cox, MP., 2019. Multiple Deeply Divergent Denisovan Ancestries in Papuans Cell, v. 177
Doi: http://doi.org/10.1016/j.cell.2019.02.035

Chung, NN., Jacobs, GS., Sudoyo, H., Malik, SG., Chew, LY., Lansing, JS. and Cox, MP., 2019. Sex-linked genetic diversity originates from persistent sociocultural processes at microgeographic scales. R Soc Open Sci, v. 6
Doi: http://doi.org/10.1098/rsos.190733

Iliescu, FM., Chaplin, G., Rai, N., Jacobs, GS., Basu Mallick, C., Mishra, A., Thangaraj, K. and Jablonski, NG., 2018. The influences of genes, the environment, and social factors on the evolution of skin color diversity in India. Am J Hum Biol, v. 30
Doi: http://doi.org/10.1002/ajhb.23170

Lansing, JS., Abundo, C., Jacobs, GS., Guillot, EG., Thurner, S., Downey, SS., Chew, LY., Bhattacharya, T., Chung, NN., Sudoyo, H. and Cox, MP., 2017. Kinship structures create persistent channels for language transmission. Proc Natl Acad Sci U S A, v. 114
Doi: http://doi.org/10.1073/pnas.1706416114

Eichstaedt, CA., Pagani, L., Antao, T., Inchley, CE., Cardona, A., Mörseburg, A., Clemente, FJ., Sluckin, TJ., Metspalu, E., Mitt, M., Mägi, R., Hudjashov, G., Metspalu, M., Mormina, M., Jacobs, GS. and Kivisild, T., 2017. Evidence of Early-Stage Selection on EPAS1 and GPR126 Genes in Andean High Altitude Populations. Sci Rep, v. 7
Doi: http://doi.org/10.1038/s41598-017-13382-4

Jacobs, GS., Sluckin, TJ. and Kivisild, T., 2016. Refining the Use of Linkage Disequilibrium as a Robust Signature of Selective Sweeps. Genetics, v. 203
Doi: http://doi.org/10.1534/genetics.115.185900

Pagani, L., Lawson, DJ., Jagoda, E., Mörseburg, A., Eriksson, A., Mitt, M., Clemente, F., Hudjashov, G., DeGiorgio, M., Saag, L., Wall, JD., Cardona, A., Mägi, R., Wilson Sayres, MA., Kaewert, S., Inchley, C., Scheib, CL., Järve, M., Karmin, M., Jacobs, GS., Antao, T., Iliescu, FM., Kushniarevich, A., Ayub, Q., Tyler-Smith, C., Xue, Y., Yunusbayev, B., Tambets, K., Mallick, CB., Saag, L., Pocheshkhova, E., Andriadze, G., Muller, C., Westaway, MC., Lambert, DM., Zoraqi, G., Turdikulova, S., Dalimova, D., Sabitov, Z., Sultana, GNN., Lachance, J., Tishkoff, S., Momynaliev, K., Isakova, J., Damba, LD., Gubina, M., Nymadawa, P., Evseeva, I., Atramentova, L., Utevska, O., Ricaut, F-X., Brucato, N., Sudoyo, H., Letellier, T., Cox, MP., Barashkov, NA., Skaro, V., Mulahasanovic, L., Primorac, D., Sahakyan, H., Mormina, M., Eichstaedt, CA., Lichman, DV., Abdullah, S., Chaubey, G., Wee, JTS., Mihailov, E., Karunas, A., Litvinov, S., Khusainova, R., Ekomasova, N., Akhmetova, V., Khidiyatova, I., Marjanović, D., Yepiskoposyan, L., Behar, DM., Balanovska, E., Metspalu, A., Derenko, M., Malyarchuk, B., Voevoda, M., Fedorova, SA., Osipova, LP., Lahr, MM., Gerbault, P., Leavesley, M., Migliano, AB., Petraglia, M., Balanovsky, O., Khusnutdinova, EK., Metspalu, E., Thomas, MG., Manica, A., Nielsen, R., Villems, R., Willerslev, E., Kivisild, T. and Metspalu, M., 2016. Genomic analyses inform on migration events during the peopling of Eurasia. Nature, v. 538
Doi: http://doi.org/10.1038/nature19792

Inchley, CE., Larbey, CDA., Shwan, NAA., Pagani, L., Saag, L., Antão, T., Jacobs, G., Hudjashov, G., Metspalu, E., Mitt, M., Eichstaedt, CA., Malyarchuk, B., Derenko, M., Wee, J., Abdullah, S., Ricaut, F-X., Mormina, M., Mägi, R., Villems, R., Metspalu, M., Jones, MK., Armour, JAL. and Kivisild, T., 2016. Selective sweep on human amylase genes postdates the split with Neanderthals Scientific Reports, v. 6
Doi: http://doi.org/10.1038/srep37198

Jacobs, GS. and Sluckin, TJ., 2015. Long-range dispersal, stochasticity and the broken accelerating wave of advance. Theor Popul Biol, v. 100C
Doi: http://doi.org/10.1016/j.tpb.2014.12.003

Kaiping, GA., Jacobs, GS., Cox, SJ. and Sluckin, TJ., 2014. Nonequivalence of updating rules in evolutionary games under high mutation rates. Phys Rev E Stat Nonlin Soft Matter Phys, v. 90
Doi: http://doi.org/10.1103/PhysRevE.90.042726

Clemente, FJ., Cardona, A., Inchley, CE., Peter, BM., Jacobs, G., Pagani, L., Lawson, DJ., Antão, T., Vicente, M., Mitt, M., DeGiorgio, M., Faltyskova, Z., Xue, Y., Ayub, Q., Szpak, M., Mägi, R., Eriksson, A., Manica, A., Raghavan, M., Rasmussen, M., Rasmussen, S., Willerslev, E., Vidal-Puig, A., Tyler-Smith, C., Villems, R., Nielsen, R., Metspalu, M., Malyarchuk, B., Derenko, M. and Kivisild, T., 2014. A Selective Sweep on a Deleterious Mutation in CPT1A in Arctic Populations. Am J Hum Genet, v. 95
Doi: http://doi.org/10.1016/j.ajhg.2014.09.016

Jacobs, G., Attenborough, R. and Kusuma, P., 2025 (No publication date). Deep histories in New Guinea: Insights from human genetics on local demography and social processes

Jacobs, G., Attenborough, R. and Kusuma, P., 2025. Deep histories in New Guinea: Insights from human genetics on regional demography and archaic introgression

Jacobs, G., Attenborough, R. and Kusuma, P., 2025. Deep histories in New Guinea: Insights from genetics on human adaptation to malaria and diverse environments

Eichstaedt, C., Pagani, L., Antao, T., Inchley, C., Cardona, A., Mörseburg, A., Clemente, F., Sluckin, T., Metspalu, E., Mitt, M., Mägi, R., Hudjashov, G., Metspalu, M., Mormina, M., Jacobs, G. and Kivisild, T., 2018. New evidence of genetic adaptation to high altitude in Andean populations
Doi: http://doi.org/10.1183/13993003.congress-2018.pa1274

Iliescu, FM., Chaplin, G., Rai, N., Jacobs, G., Mallick, CB., Mishra, A., Goto, R., Tamang, R., Chaubey, G., Romero, IG., Crivellaro, F., Pitchappan, R., Singh, L., Mirazon-Lahr, M., Metspalu, M., Thangaraj, K., Kivisild, T. and Jablonski, NG., 2017. The complicated genetic landscape of skin color in India AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, v. 162